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CIPA is the Lund University infrastructure for image processing and analysis. Through CIPA, researchers have access to dedicated hardware, software, and application experts to enable efficient handling, extraction, and analysis of image data. Services offered by CIPA: High performance workflows and method developmentImage processing and analysisGuidance and tutorials to softwareAccess to computer
https://www.microscopy.lu.se/welcome-cipa - 2025-04-25
Spectroscopic data processing and analysis webinarOn 15th February 2023, Carl Troein, CIPA Application Expert specialised in 2D spectroscopy analysis, held the webinar “Spectroscopic Data Processing and Analysis” on behalf of CIPA – the coordinating unit of the InfraVis Lund node. The webinar covered problems in spectroscopic data analysis and methods for their identification and correction as wel
https://www.microscopy.lu.se/cipa/news - 2025-04-25
Here we present a selection of projects where CIPA experts have been involved in image processing and analysis. Click on images to view them in full resolution. Images marked "CC-BY-4.0" are distributed under the terms of the Creative Commons CC-BY-4.0 license, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Blender add-on
https://www.microscopy.lu.se/cipa/gallery - 2025-04-25
If you want assistance from CIPA with image/data processing, AI analysis or some other task, we recommend that you fill out this form to provide us with details about the project and its administration. We will then contact you to set up a first meeting, either online or in person. Contact details Your name (required) Your email address (required) Principal investigator PI, group leader or similar
https://www.microscopy.lu.se/form/contact-cipa - 2025-04-25
Wednesday 7 May 2025, 10.00–12.00 Venue: BMC:E11080 Eftertanken, Forum Medicum Sölvegatan 19, Lund Welcome to our fifth drop-in session for help with Image Analysis!Coffee and sandwiches will be served to registered attendees. You are of course welcome to drop in regardless of registration.Brief preliminary agenda:10.00-10.15 Coffee & mingle10.15-10.25 Welcome & tomographic imaging – Emanuel Lar
https://www.microscopy.lu.se/form/cipa-5th-drop-session-forum-medicum - 2025-04-25
Interreg ÖKS During the past decade, significant development and investments have been made in advanced research infrastructures in the Öresund Kattegat Skagerrak (ÖKS)-Hamburg area. The facilities already provide advanced Life Science tools, but there is an untapped potential to further expand the collaboration at and around the sites, as well as cross-borders.HALRIC aims to be a springboard for
https://www.microscopy.lu.se/hanseatic-life-science-research-infrastructure-consortium-halric - 2025-04-25
CIPA is a Lund University research infrastructure designed to meet the needs for management, analysis and visualization of scientific data. The main motivation for CIPA is the amount of expertise needed to handle the complexity and sheer volume of data generated by modern research techniques. CIPA mainly provides access to expertise, but also to computer hardware and imaging software. By consultin
https://www.microscopy.lu.se/cipa/about - 2025-04-25
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https://www.microscopy.lu.se/form/sign-miclu-email-list - 2025-04-25
Research Infrastructures and Initiatives Examples of research infrastructures of high relevance for the CIPA community, at Lund University and elsewhere (external links):InfraVisInfraVis@LUMBioQIMMAX IVESSNAISSLUNARCThrough the National Academic Infrastructure for Supercomputing in Sweden (NAISS) and the Lund University centre for scientific and technical computing (LUNARC), CIPA users can apply
https://www.microscopy.lu.se/cipa/resources - 2025-04-25
Events 2024Dec 4: CIPA drop-in session at Forum MedicumVenue: BMC:E11075 Snilleblixten, Forum Medicum, Sölvegatan 19, LundWelcome to our drop-in session for help with Image Analysis!09.45-10.00 Coffee & mingle10.00-10.10 Welcome & tomographic imaging – Emanuel Larsson10.10-10.20 GUI development & spectroscopic imaging – Carl Troein10.20-10.30 Machine learning applied to images – Alexandros Sop
https://www.microscopy.lu.se/welcome-cipa/events-and-workshops - 2025-04-25
Kajsa M Paulsson, Head of unit/directorCIPA was initiated and is headed by Kajsa M Paulsson. While leading her research group at Experimental Medical Science, Kajsa has in parallel built a reputation and competence in management of Research Infrastructures. She has, for example, been a board member of a number of Swedish and European Research Infrastructures and initiatives. She is also an acknowl
https://www.microscopy.lu.se/welcome-cipa/cipa-staff - 2025-04-25
InfraVis is a Swedish national Research Infrastructure for data visualization. InfraVis helps you visualize research data from any scientific domain and gives you access to state-of-the-art visualization competence, support, equipment, training, and methods. InfraVis@LU is the InfraVis node for Visualisation and Analysis at Lund University, coordinated by CIPA. InfraVis provides advanced visuali
https://www.microscopy.lu.se/cipa/infravislu - 2025-04-25
ServicesCryoEM at Lund University has a sample preparation lab installed with Mark IV Vitrobot (Thermo Fisher) to prepare cryo grids. Samples can be prescreened by a negative stain, and the cryo grids can be shipped to SciLifeLab or other facilities. In the beginning of 2025 there will also be a state of the art Glacios2 cryo electron microscope with a direct electron detector Falcon4i in our faci
https://www.microscopy.lu.se/cryoem-life-sciences-lund-university - 2025-04-25
Welcome to contact one of our experts! Crispin Hetherington Crispin’s background is transmission electron microscopy in materials science. In his various job positions in microscope user facilities, he gained a wide experience of different samples and of microscopy techniques including high resolution and aberration correction in TEM and STEM. His present role in nCHREM now mainly involves operat
https://www.microscopy.lu.se/single-particle-cryoem-0/cryoem-applications-experts - 2025-04-25
Lotta Happonen I work as a researcher at the Faculty of Medicine studying protein-protein complexes arising at the host-pathogen interface, with the aim of understanding how pathogens evade the human immune defence. The main methods we are using are quantitative and structural mass spectrometry (cross-linking and hydrogen-deuterium exchange) in combination with single-particle cryo-EM. Since its s
https://www.microscopy.lu.se/single-particle-cryoem-0/cryoem-infrastructure-stakeholders - 2025-04-25
The Medical Protein Chemistry research group headed by prof. Anna Blom is located at the Wallenberg Laboratory within Skåne University Hospital in Malmö. The group is focused on the complement system in health and disease. Our ambition is to make high quality basic science based on clinically relevant questions and yielding novel diagnostic approaches and clinical interventions. Our research is su
https://www.protein-chemistry.lu.se/anna-blom-research-group-0 - 2025-04-25
The Medical Protein Chemistry research group headed by prof. Anna Blom is located at the Wallenberg Laboratory within Skåne University Hospital in Malmö. The group is focused on the complement system in health and disease. The complement, crucial part of innate immune system is involved in many basic biological processes such as defence against infections but when activated in a wrong place or no
https://www.protein-chemistry.lu.se/protein-chemistry-research-group - 2025-04-25
Best publications from our group over past years. The Library in Dublin. King B.C., Kulak K, Krus U., Rosberg R., Golec E., Wozniak K., Gomez M.F., Zhange E., O'Connell D., Renström E. and Blom A.M. (2019) Complement C3 proteinst against autophagy related beta-cell detah via ATG16L1 interaction and regulation of autophagy.., Cell Metabolism, 29, 202-210. Holmquist E., Bartoschek M., Reitsma B., Ja
https://www.protein-chemistry.lu.se/top-publications - 2025-04-25
List of selected publications from our research group exemplifying the projects we are conducting. The group in Madrid at Complement Worshop Blom. A. M., Pertoft H. and Fries E. (1995) Inter-a-inhibitor is required for the formation of the hyaluronan-containing coat on fibroblasts and mesothelial cells. J. Biol. Chem., 270, 9698-9701. Blom A. M., Mörgelin M., Öyen M., Jarvet J. and Fries E. (1999)
https://www.protein-chemistry.lu.se/top-publications/selected-publications-group - 2025-04-25
